STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_7192Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (229 aa)    
Predicted Functional Partners:
MXAN_7190
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.631
MXAN_7189
Conserved hypothetical protein; Identified by similarity to PIR:AB2451.
 
    0.576
MXAN_7193
Hypothetical protein; Identified by Glimmer2; putative.
       0.576
MXAN_7191
Hypothetical protein; Identified by Glimmer2; putative.
       0.545
MXAN_6541
Conserved hypothetical protein.
 
     0.514
MXAN_7194
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.446
MXAN_6542
SPFH/band 7 domain protein; Identified by match to protein family HMM PF01145.
 
     0.439
MXAN_7188
Hypothetical protein; Identified by Glimmer2; putative.
       0.416
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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