STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_7387Chitinase, class I; Identified by match to protein family HMM PF00182; match to protein family HMM PF01476. (364 aa)    
Predicted Functional Partners:
MXAN_7386
Hypothetical protein; Identified by Glimmer2; putative.
       0.648
MXAN_4503
Baseplate assembly protein W; Identified by match to protein family HMM PF04965.
  
    0.581
MXAN_1842
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.546
MXAN_7388
Identified by match to protein family HMM PF02630.
       0.534
MXAN_4505
Putative phage tail protein; Identified by match to protein family HMM TIGR02242.
  
    0.522
MXAN_1845
Putative phage late control gene D protein.
  
  
 0.464
MXAN_4500
Conserved domain protein; Identified by similarity to GB:BAB52826.1.
  
  
 0.464
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.