STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4290Transposase, IS605 OrfB family; Identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766. (159 aa)    
Predicted Functional Partners:
CUS_4719
Conserved domain protein.
 
      0.886
CUS_4835
Conserved domain protein; Overlaps another CDS with the same product name.
    
   0.836
CUS_4701
Integrase core domain protein; Identified by match to protein family HMM PF00665.
    
   0.630
CUS_4834
Conserved domain protein; Overlaps another CDS with the same product name.
    
   0.630
CUS_6355
Integrase core domain protein; Identified by match to protein family HMM PF00665.
    
   0.630
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.