Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_4311Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (733 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.842
CUS_7547
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883.
  
   0.786
CUS_6128
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.705
CUS_5269
Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
    0.694
CUS_7026
Transcriptional regulator, AraC family.
  
     0.683
CUS_7983
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.656
CUS_5925
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
  
  0.653
CUS_7148
Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
    0.634
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.627
CUS_5212
Putative arabinose metabolism transcriptional repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF00532.
  
    0.523
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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