Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4322Hypothetical protein. (113 aa)    
Predicted Functional Partners:
CUS_4274
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
 
     0.976
CUS_4297
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
     0.963
CUS_4500
Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF04851.
 
  
 0.858
CUS_4505
Hypothetical protein.
 
   
 0.671
CUS_5093
Hypothetical protein.
  
 
 0.660
CUS_5095
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
 
 0.660
CUS_5100
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
 
 0.627
CUS_4334
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
 
 0.608
CUS_5007
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851.
  
 
 0.459
CUS_5189
Eco57I restriction endonuclease; Identified by match to protein family HMM PF07669.
  
 
 0.459
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.