Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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CUS_4334Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420. (248 aa)    
Predicted Functional Partners:
CUS_4333
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 
 0.978
CUS_4332
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.956
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02736; match to protein family HMM TIGR00497.
 
 
 0.899
CUS_4423
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.869
CUS_5097
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.811
CUS_4274
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
 
 
 0.705
CUS_4586
Hypothetical protein.
  
 
 0.650
CUS_4337
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
 
     0.635
CUS_4267
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.608
CUS_4297
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 
 0.608
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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