CUS_4368 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4368

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (580 aa)

Predicted Functional Partners:

CUS_4367

0.937

CUS_4369

0.862

CUS_4434

0.771

CUS_7094

0.750

CUS_5646

0.749

CUS_4433

0.747

CUS_5585

0.733

CUS_5431

0.720

CUS_5449

0.697

CUS_5448

0.693

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4367	CUS_4368	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.937
CUS_4367	CUS_4369	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Conserved domain protein.	0.937
CUS_4367	CUS_4433	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.716
CUS_4367	CUS_4434	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.675
CUS_4367	CUS_5448	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.703
CUS_4367	CUS_5449	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.581
CUS_4367	CUS_7094	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.699
CUS_4368	CUS_4367	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.937
CUS_4368	CUS_4369	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Conserved domain protein.	0.862
CUS_4368	CUS_4433	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.747
CUS_4368	CUS_4434	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.771
CUS_4368	CUS_5431	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.720
CUS_4368	CUS_5448	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.693
CUS_4368	CUS_5449	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.697
CUS_4368	CUS_5585	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.733
CUS_4368	CUS_5646	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.749
CUS_4368	CUS_7094	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.750
CUS_4369	CUS_4367	Conserved domain protein.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.937
CUS_4369	CUS_4368	Conserved domain protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.862
CUS_4369	CUS_4433	Conserved domain protein.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.729