Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4381Dinitrogenase iron-molybdenum cofactor; Identified by match to protein family HMM PF02579. (134 aa)    
Predicted Functional Partners:
CUS_4253
Identified by match to protein family HMM PF02001.
 
    0.940
CUS_4383
Hypothetical protein.
 
     0.807
CUS_4382
Oxidoreductase; Identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909.
      0.801
CUS_4384
Plasmid recombination enzyme; Identified by match to protein family HMM PF01076.
       0.531
CUS_6163
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
    0.479
CUS_4385
Conserved domain protein.
       0.431
CUS_7935
Hypothetical protein.
  
   0.419
CUS_7932
Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148.
  
   0.410
CUS_7931
Conserved domain protein.
  
   0.401
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (14%) [HD]