Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_4387WD domain, G-beta repeat protein. (1235 aa)    
Predicted Functional Partners:
CUS_6232
Putative ribonuclease; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
    
 0.949
ylqF
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 0.928
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family.
    
 0.927
CUS_4587
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.
   
 0.908
CUS_6925
Conserved domain protein.
    
 0.871
CUS_7496
Hypothetical protein.
   
 0.871
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.841
CUS_4767
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
   
 0.831
CUS_5670
Identified by match to protein family HMM PF08929.
   
 0.831
CUS_5574
Conserved domain protein.
  
   0.829
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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