Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_4433Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185. (196 aa)    
Predicted Functional Partners:
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.950
CUS_4435
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.946
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.779
CUS_5581
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.776
CUS_5641
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.765
CUS_4368
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.747
CUS_4369
Conserved domain protein.
  
     0.729
CUS_4432
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.729
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.727
CUS_6817
ABC transporter, ATP-binding protein.
  
     0.720
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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