STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4437Putative membrane protein. (244 aa)    
Predicted Functional Partners:
CUS_4436
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.773
CUS_4438
Hypothetical protein.
       0.773
CUS_4439
Methyltransferase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.773
CUS_4440
Hypothetical protein.
       0.697
CUS_4441
Hypothetical protein; Identified by glimmer; putative.
       0.472
CUS_4433
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
       0.468
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
       0.468
CUS_4435
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.468
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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