Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_4447Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (265 aa)    
Predicted Functional Partners:
CUS_4448
Conserved domain protein.
       0.741
CUS_4449
Putative small multi-drug export protein; Identified by match to protein family HMM PF06695.
       0.726
CUS_4450
Conserved domain protein.
  
    0.715
CUS_4446
Identified by match to protein family HMM PF01171; Belongs to the TtcA family.
       0.709
ureA
Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.
  
 
  0.669
CUS_4451
Hypothetical protein; Identified by glimmer; putative.
       0.639
ilvA
Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.594
CUS_4445
Hypothetical protein; Identified by glimmer; putative.
       0.440
CUS_6895
Conserved domain protein.
  
     0.426
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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