STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4480Hypothetical protein. (158 aa)    
Predicted Functional Partners:
CUS_4479
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_4679
Sel1 repeat protein; Identified by match to protein family HMM PF08238.
  
     0.761
CUS_5392
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.760
CUS_6559
Hypothetical protein.
  
     0.760
CUS_6799
Nicotinate phosphoribosyltransferase, (NAPRTase) family; Identified by match to protein family HMM PF04095; Belongs to the NAPRTase family.
 
     0.718
CUS_5802
Identified by match to protein family HMM PF00633.
  
     0.714
CUS_6542
Hypothetical protein.
  
     0.682
CUS_7922
Uridine kinase family protein.
  
 
   0.655
CUS_5869
Putative lipoprotein.
  
     0.622
CUS_4481
Hypothetical protein; Identified by glimmer; putative.
       0.584
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.