Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4482DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family. (361 aa)    
Predicted Functional Partners:
dam
DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571.
 
  
 0.573
CUS_4483
Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383.
       0.481
CUS_4481
Hypothetical protein; Identified by glimmer; putative.
       0.477
CUS_7737
Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.444
CUS_5458
Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.436
CUS_4484
Conserved domain protein.
       0.432
CUS_4485
Hypothetical protein; Identified by glimmer; putative.
       0.417
CUS_4486
Hypothetical protein; Identified by glimmer; putative.
       0.403
CUS_4738
Hypothetical protein; Identified by glimmer; putative.
  
    0.400
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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