CUS_4489 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4489

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (585 aa)

Predicted Functional Partners:

CUS_5021

0.869

CUS_4488

0.836

CUS_5310

0.780

CUS_5645

0.618

CUS_5346

0.540

CUS_5657

0.512

CUS_5646

0.486

CUS_7472

0.480

rpsQ

0.476

CUS_7084

0.421

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4488	CUS_4489	CUS_4488	CUS_4489	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.836
CUS_4488	CUS_5310	CUS_4488	CUS_5310	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.567
CUS_4488	CUS_5645	CUS_4488	CUS_5645	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	0.618
CUS_4488	CUS_5646	CUS_4488	CUS_5646	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.486
CUS_4488	CUS_5657	CUS_4488	CUS_5657	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	0.512
CUS_4488	rpsQ	CUS_4488	CUS_6505	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.466
CUS_4489	CUS_4488	CUS_4489	CUS_4488	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.836
CUS_4489	CUS_5021	CUS_4489	CUS_5021	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.	0.869
CUS_4489	CUS_5310	CUS_4489	CUS_5310	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.780
CUS_4489	CUS_5346	CUS_4489	CUS_5346	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.	0.540
CUS_4489	CUS_5645	CUS_4489	CUS_5645	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	0.618
CUS_4489	CUS_5646	CUS_4489	CUS_5646	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.486
CUS_4489	CUS_5657	CUS_4489	CUS_5657	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	0.512
CUS_4489	CUS_7084	CUS_4489	CUS_7084	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.421
CUS_4489	CUS_7472	CUS_4489	CUS_7472	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.480
CUS_4489	rpsQ	CUS_4489	CUS_6505	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.476
CUS_5021	CUS_4489	CUS_5021	CUS_4489	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.869
CUS_5310	CUS_4488	CUS_5310	CUS_4488	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.567
CUS_5310	CUS_4489	CUS_5310	CUS_4489	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.780
CUS_5346	CUS_4489	CUS_5346	CUS_4489	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.540