CUS_4507 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4507

Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386. (447 aa)

Predicted Functional Partners:

CUS_4508

0.985

CUS_5114

0.945

CUS_6659

0.945

CUS_4637

0.759

CUS_6212

0.759

CUS_7635

0.759

nifJ

0.715

CUS_4509

0.461

CUS_4506

0.442

kdpE

0.441

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4506	CUS_4507	CUS_4506	CUS_4507	Conserved domain protein.	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	0.442
CUS_4506	CUS_4508	CUS_4506	CUS_4508	Conserved domain protein.	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	0.432
CUS_4507	CUS_4506	CUS_4507	CUS_4506	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Conserved domain protein.	0.442
CUS_4507	CUS_4508	CUS_4507	CUS_4508	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	0.985
CUS_4507	CUS_4509	CUS_4507	CUS_4509	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.461
CUS_4507	CUS_4637	CUS_4507	CUS_4637	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Hypothetical protein; Identified by glimmer; putative.	0.759
CUS_4507	CUS_5114	CUS_4507	CUS_5114	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	0.945
CUS_4507	CUS_6212	CUS_4507	CUS_6212	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Ion channel; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.	0.759
CUS_4507	CUS_6659	CUS_4507	CUS_6659	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02254.	0.945
CUS_4507	CUS_7635	CUS_4507	CUS_7635	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Transporter, cation channel family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.	0.759
CUS_4507	kdpE	CUS_4507	CUS_4510	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	KDP operon transcriptional regulatory protein KdpE; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.441
CUS_4507	nifJ	CUS_4507	CUS_6517	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.715
CUS_4508	CUS_4506	CUS_4508	CUS_4506	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	Conserved domain protein.	0.432
CUS_4508	CUS_4507	CUS_4508	CUS_4507	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	0.985
CUS_4508	CUS_4509	CUS_4508	CUS_4509	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.471
CUS_4508	kdpE	CUS_4508	CUS_4510	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	KDP operon transcriptional regulatory protein KdpE; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.461
CUS_4508	nifJ	CUS_4508	CUS_6517	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.413
CUS_4509	CUS_4507	CUS_4509	CUS_4507	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.	0.461
CUS_4509	CUS_4508	CUS_4509	CUS_4508	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.	0.471
CUS_4509	kdpE	CUS_4509	CUS_4510	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	KDP operon transcriptional regulatory protein KdpE; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.982