Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_4548Identified by match to protein family HMM PF01882. (387 aa)    
Predicted Functional Partners:
CUS_4547
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
 
  
 0.843
CUS_4549
Identified by match to protein family HMM PF01841.
 
    0.840
CUS_4546
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_4550
Hypothetical protein; Identified by glimmer; putative.
       0.650
CUS_6730
Identified by match to protein family HMM PF01841.
 
    0.558
CUS_7291
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.505
CUS_5414
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.489
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.488
CUS_4545
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
       0.488
CUS_6099
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.451
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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