CUS_4549 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4549

Identified by match to protein family HMM PF01841. (745 aa)

Predicted Functional Partners:

CUS_4547

0.936

CUS_4548

0.840

CUS_7314

0.767

CUS_6728

0.765

CUS_4546

0.737

CUS_4550

0.682

CUS_6729

0.646

rumA

0.468

CUS_4545

0.468

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4545	CUS_4546	CUS_4545	CUS_4546	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	Hypothetical protein; Identified by glimmer; putative.	0.488
CUS_4545	CUS_4547	CUS_4545	CUS_4547	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	0.488
CUS_4545	CUS_4548	CUS_4545	CUS_4548	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	Identified by match to protein family HMM PF01882.	0.488
CUS_4545	CUS_4549	CUS_4545	CUS_4549	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	Identified by match to protein family HMM PF01841.	0.468
CUS_4545	CUS_4550	CUS_4545	CUS_4550	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	Hypothetical protein; Identified by glimmer; putative.	0.420
CUS_4545	rumA	CUS_4545	CUS_4544	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.773
CUS_4546	CUS_4545	CUS_4546	CUS_4545	Hypothetical protein; Identified by glimmer; putative.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	0.488
CUS_4546	CUS_4547	CUS_4546	CUS_4547	Hypothetical protein; Identified by glimmer; putative.	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	0.773
CUS_4546	CUS_4548	CUS_4546	CUS_4548	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF01882.	0.773
CUS_4546	CUS_4549	CUS_4546	CUS_4549	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF01841.	0.737
CUS_4546	CUS_4550	CUS_4546	CUS_4550	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.650
CUS_4546	rumA	CUS_4546	CUS_4544	Hypothetical protein; Identified by glimmer; putative.	23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.488
CUS_4547	CUS_4545	CUS_4547	CUS_4545	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	0.488
CUS_4547	CUS_4546	CUS_4547	CUS_4546	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Hypothetical protein; Identified by glimmer; putative.	0.773
CUS_4547	CUS_4548	CUS_4547	CUS_4548	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Identified by match to protein family HMM PF01882.	0.842
CUS_4547	CUS_4549	CUS_4547	CUS_4549	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Identified by match to protein family HMM PF01841.	0.936
CUS_4547	CUS_4550	CUS_4547	CUS_4550	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Hypothetical protein; Identified by glimmer; putative.	0.650
CUS_4547	CUS_6729	CUS_4547	CUS_6729	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	Identified by match to protein family HMM PF01882.	0.465
CUS_4547	rumA	CUS_4547	CUS_4544	ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.	23S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.488
CUS_4548	CUS_4545	CUS_4548	CUS_4545	Identified by match to protein family HMM PF01882.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	0.488