STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4654Putative esterase; Identified by match to protein family HMM PF00756. (334 aa)    
Predicted Functional Partners:
xyn10B
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00041; match to protein family HMM PF00331; match to protein family HMM PF02018.
   0.955
CUS_5770
Hypothetical protein.
    
   0.937
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
 
  
 0.867
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
  
 0.838
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
 
 
   0.823
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.823
xyl43A
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
 
  
 0.773
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
 
 
   0.771
CUS_6903
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF00652.
 
  
 0.760
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
 0.758
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.