nuoE protein (Ruminococcus albus 8) - STRING interaction network

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gene neighborhood

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Score

nuoE

NADH-quinone oxidoreductase, E subunit; Identified by match to protein family HMM PF01257. (163 aa)

Predicted Functional Partners:

CUS_4659

0.999

hymB

0.999

CUS_4661

0.999

CUS_4932

0.969

CUS_5977

0.890

CUS_5978

0.890

CUS_4425

0.878

nifJ

0.876

CUS_5074

0.860

CUS_5645

0.860

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4425	CUS_4659	CUS_4425	CUS_4659	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.941
CUS_4425	CUS_4661	CUS_4425	CUS_4661	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	0.994
CUS_4425	CUS_4932	CUS_4425	CUS_4932	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	Ferredoxin; Identified by match to protein family HMM PF00037.	0.511
CUS_4425	hymB	CUS_4425	CUS_4660	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	Protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00037; match to protein family HMM PF01512.	0.941
CUS_4425	nifJ	CUS_4425	CUS_6517	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.988
CUS_4425	nuoE	CUS_4425	CUS_4658	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	NADH-quinone oxidoreductase, E subunit; Identified by match to protein family HMM PF01257.	0.878
CUS_4659	CUS_4425	CUS_4659	CUS_4425	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	0.941
CUS_4659	CUS_4661	CUS_4659	CUS_4661	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	0.999
CUS_4659	CUS_4932	CUS_4659	CUS_4932	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Ferredoxin; Identified by match to protein family HMM PF00037.	0.998
CUS_4659	CUS_5074	CUS_4659	CUS_5074	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.866
CUS_4659	CUS_5645	CUS_4659	CUS_5645	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	0.867
CUS_4659	CUS_5977	CUS_4659	CUS_5977	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF05193; overlaps another CDS with the same product name.	0.939
CUS_4659	CUS_5978	CUS_4659	CUS_5978	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; overlaps another CDS with the same product name.	0.939
CUS_4659	hymB	CUS_4659	CUS_4660	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00037; match to protein family HMM PF01512.	0.999
CUS_4659	nifJ	CUS_4659	CUS_6517	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.993
CUS_4659	nuoE	CUS_4659	CUS_4658	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	NADH-quinone oxidoreductase, E subunit; Identified by match to protein family HMM PF01257.	0.999
CUS_4661	CUS_4425	CUS_4661	CUS_4425	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	0.994
CUS_4661	CUS_4659	CUS_4661	CUS_4659	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.999
CUS_4661	CUS_4932	CUS_4661	CUS_4932	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	Ferredoxin; Identified by match to protein family HMM PF00037.	0.982
CUS_4661	hymB	CUS_4661	CUS_4660	Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.	Protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00037; match to protein family HMM PF01512.	0.999