Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CUS_4663Dockerin type I repeat protein; Identified by match to protein family HMM PF00404. (660 aa)    
Predicted Functional Partners:
ara43A
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.804
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
 
 0.757
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
   
 0.739
CUS_5988
Glycosyl hydrolase family 8; Identified by match to protein family HMM PF01270.
 
   
 0.701
ganB
Arabinogalactan endo-1,4-beta-galactosidase; Identified by match to protein family HMM PF07745.
  
  
 0.679
CUS_5883
Putative lipoprotein.
  
     0.669
CUS_7064
Hypothetical protein.
 
     0.639
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.638
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
  0.637
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
  
  0.626
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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