STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4682Identified by match to protein family HMM PF08011. (526 aa)    
Predicted Functional Partners:
CUS_4648
Hypothetical protein.
  
     0.764
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.720
CUS_4370
Hypothetical protein.
  
     0.664
CUS_5627
Identified by match to protein family HMM TIGR01987.
  
     0.586
CUS_6882
Conserved domain protein.
  
     0.528
CUS_5626
Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.
  
     0.494
CUS_7377
Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.
  
     0.492
CUS_7376
Hypothetical protein.
  
     0.476
CUS_6267
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.423
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.