CUS_4688 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4688

Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027. (221 aa)

Predicted Functional Partners:

nifJ

0.887

rpoB

0.743

rpoC

0.732

rpoA

0.725

CUS_5811

0.717

CUS_7748

0.685

CUS_5645

0.664

cmk

0.644

rpoD

0.641

CUS_6221

0.641

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4688	CUS_5645	CUS_4688	CUS_5645	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	0.664
CUS_4688	CUS_5811	CUS_4688	CUS_5811	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.717
CUS_4688	CUS_6221	CUS_4688	CUS_6221	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937.	0.641
CUS_4688	CUS_7748	CUS_4688	CUS_7748	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Hypothetical protein.	0.685
CUS_4688	cmk	CUS_4688	CUS_7773	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Cytidylate kinase; Identified by match to protein family HMM PF01553; match to protein family HMM PF02224; match to protein family HMM TIGR00017.	0.644
CUS_4688	nifJ	CUS_4688	CUS_6517	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.887
CUS_4688	rpoA	CUS_4688	CUS_6485	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	RNA polymerase, alpha subunit C-terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.725
CUS_4688	rpoB	CUS_4688	CUS_7658	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.743
CUS_4688	rpoC	CUS_4688	CUS_7659	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.732
CUS_4688	rpoD	CUS_4688	CUS_6158	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.641
CUS_5645	CUS_4688	CUS_5645	CUS_4688	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.664
CUS_5645	CUS_6221	CUS_5645	CUS_6221	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937.	0.579
CUS_5645	CUS_7748	CUS_5645	CUS_7748	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	Hypothetical protein.	0.865
CUS_5645	cmk	CUS_5645	CUS_7773	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	Cytidylate kinase; Identified by match to protein family HMM PF01553; match to protein family HMM PF02224; match to protein family HMM TIGR00017.	0.879
CUS_5645	nifJ	CUS_5645	CUS_6517	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.871
CUS_5645	rpoB	CUS_5645	CUS_7658	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.581
CUS_5645	rpoC	CUS_5645	CUS_7659	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.519
CUS_5645	rpoD	CUS_5645	CUS_6158	Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.526
CUS_5811	CUS_4688	CUS_5811	CUS_4688	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.717
CUS_5811	CUS_6221	CUS_5811	CUS_6221	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937.	0.818