STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4697Conserved domain protein. (360 aa)    
Predicted Functional Partners:
CUS_4699
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.954
CUS_4698
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.934
CUS_5311
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.846
CUS_6117
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.830
CUS_6269
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.815
CUS_5310
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.799
CUS_4695
Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.796
CUS_6268
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.784
CUS_4696
Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.778
CUS_7088
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.769
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.