Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_4699ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (322 aa)    
Predicted Functional Partners:
CUS_4698
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.982
CUS_4697
Conserved domain protein.
 
 0.954
CUS_5310
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.928
CUS_6268
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.928
CUS_7087
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.927
CUS_5309
Identified by match to protein family HMM PF09084.
 
 0.905
CUS_7089
ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF03180; match to protein family HMM PF04069.
 
 0.905
CUS_6118
Identified by match to protein family HMM PF04069; match to protein family HMM PF09084.
 
 0.904
CUS_6270
Identified by match to protein family HMM PF09084.
 
 0.899
CUS_4700
Flavoredoxin family protein.
  
 
  0.661
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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