Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_4725DNA binding domain protein, excisionase family; Identified by match to protein family HMM TIGR01764. (52 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.902
CUS_4726
Hypothetical protein; Identified by glimmer; putative.
       0.773
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
     
 0.563
CUS_7348
Putative aconitate hydratase.
     
 0.532
CUS_4724
Identified by match to protein family HMM PF01637.
       0.517
CUS_8015
Citrate (Si)-synthase; Identified by match to protein family HMM PF00285.
    
  0.496
CUS_5491
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.
     
  0.492
CUS_5922
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
     
  0.492
nadC
Nicotinate-nucleotide diphosphorylase (carboxylating); Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.
     
  0.492
CUS_6289
Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.
     
  0.492
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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