STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4733Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965. (125 aa)    
Predicted Functional Partners:
CUS_4734
Peptidase, M56 family; Identified by match to protein family HMM PF05569.
 
 
 0.994
CUS_5991
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.747
CUS_4440
Hypothetical protein.
  
  
 0.640
CUS_7579
Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.
  
  
 0.640
CUS_7625
Heavy metal-binding family protein.
  
  
 0.640
CUS_4732
Hypothetical protein; Identified by glimmer; putative.
       0.598
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
    
  0.578
CUS_6175
Hypothetical protein.
  
  
 0.548
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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