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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4785DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. (103 aa)    
Predicted Functional Partners:
CUS_6254
Competence/damage-inducible protein CinA C-terminal domain protein; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.
    
 0.657
CUS_4723
Hypothetical protein.
  
   0.638
CUS_5931
Hypothetical protein.
  
     0.598
CUS_5941
Hypothetical protein.
  
     0.594
CUS_6652
Hypothetical protein.
  
     0.586
CUS_5101
Hypothetical protein.
  
     0.570
CUS_5634
Conserved domain protein.
  
   0.552
CUS_7310
Conserved domain protein.
 
     0.551
CUS_4649
Hypothetical protein.
    
   0.533
CUS_6219
Hypothetical protein.
  
     0.493
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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