CUS_4796 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_4796

Hypothetical protein; Identified by glimmer; putative. (62 aa)

Predicted Functional Partners:

CUS_4795

0.773

CUS_4797

0.689

CUS_4798

0.561

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4795	CUS_4796	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	Hypothetical protein; Identified by glimmer; putative.	0.773
CUS_4795	CUS_4797	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	0.778
CUS_4795	CUS_4798	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	0.561
CUS_4796	CUS_4795	Hypothetical protein; Identified by glimmer; putative.	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	0.773
CUS_4796	CUS_4797	Hypothetical protein; Identified by glimmer; putative.	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	0.689
CUS_4796	CUS_4798	Hypothetical protein; Identified by glimmer; putative.	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	0.561
CUS_4797	CUS_4795	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	0.778
CUS_4797	CUS_4796	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	Hypothetical protein; Identified by glimmer; putative.	0.689
CUS_4797	CUS_4798	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	0.625
CUS_4798	CUS_4795	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	Helicase associated domain protein; Identified by match to protein family HMM PF03457.	0.561
CUS_4798	CUS_4796	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	Hypothetical protein; Identified by glimmer; putative.	0.561
CUS_4798	CUS_4797	Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.	Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF03457; match to protein family HMM PF04851.	0.625