Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_4807Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; Identified by match to protein family HMM TIGR03570. (199 aa)    
Predicted Functional Partners:
CUS_4808
Putative undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397.
    0.969
CUS_5340
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
    0.875
CUS_4809
Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  0.809
CUS_5341
Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
  0.806
CUS_4800
Putative membrane protein.
  
    0.775
CUS_4803
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
     
 0.774
CUS_4804
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
     
 0.774
CUS_4806
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
     
 0.774
lspL
UDP-glucuronate 5'-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
     
 0.773
CUS_4801
Hypothetical protein.
       0.773
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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