Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUS_4859 | CUS_4860 | CUS_4859 | CUS_4860 | Hypothetical protein. | Putative DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675. | 0.773 |
| CUS_4859 | CUS_4861 | CUS_4859 | CUS_4861 | Hypothetical protein. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.678 |
| CUS_4860 | CUS_4859 | CUS_4860 | CUS_4859 | Putative DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675. | Hypothetical protein. | 0.773 |
| CUS_4860 | CUS_4861 | CUS_4860 | CUS_4861 | Putative DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.678 |
| CUS_4861 | CUS_4859 | CUS_4861 | CUS_4859 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.678 |
| CUS_4861 | CUS_4860 | CUS_4861 | CUS_4860 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Putative DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675. | 0.678 |
| CUS_4861 | CUS_5734 | CUS_4861 | CUS_5734 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686. | 0.444 |
| CUS_4861 | CUS_5735 | CUS_4861 | CUS_5735 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.505 |
| CUS_4861 | CUS_6067 | CUS_4861 | CUS_6067 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein; Identified by glimmer; putative. | 0.447 |
| CUS_4861 | dam | CUS_4861 | CUS_7906 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571. | 0.585 |
| CUS_5734 | CUS_4861 | CUS_5734 | CUS_4861 | FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.444 |
| CUS_5734 | CUS_5735 | CUS_5734 | CUS_5735 | FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686. | Hypothetical protein. | 0.954 |
| CUS_5735 | CUS_4861 | CUS_5735 | CUS_4861 | Hypothetical protein. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.505 |
| CUS_5735 | CUS_5734 | CUS_5735 | CUS_5734 | Hypothetical protein. | FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686. | 0.954 |
| CUS_6067 | CUS_4861 | CUS_6067 | CUS_4861 | Hypothetical protein; Identified by glimmer; putative. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.447 |
| dam | CUS_4861 | CUS_7906 | CUS_4861 | DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.585 |