Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4877Identified by match to protein family HMM PF04138. (205 aa)    
Predicted Functional Partners:
CUS_7343
Putative ATP synthase F0, A subunit.
 
   
 0.635
CUS_6522
Bacterial membrane protein YfhO; Identified by match to protein family HMM PF09586.
 
   
 0.613
CUS_8127
Conserved domain protein; Overlaps another CDS with the same product name.
 
   
 0.481
CUS_7715
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.442
CUS_6523
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.433
CUS_5984
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.426
CUS_7331
Conserved domain protein.
 
   
 0.422
CUS_4878
Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
       0.407
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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