Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
CUS_4913Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360. (653 aa)    
Predicted Functional Partners:
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
 
   
 0.896
CUS_7707
Identified by match to protein family HMM PF00156.
 
  
 0.889
CUS_4915
Putative ribonuclease M5; Identified by match to protein family HMM PF01751.
       0.831
CUS_7450
Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481.
 
  
 0.787
CUS_4916
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
       0.773
CUS_7963
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
   
  
 0.768
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
  
 0.757
CUS_7657
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368.
 
  
 0.751
CUS_4917
Conserved domain protein.
       0.747
CUS_5517
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
   
  
 0.737
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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