STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4916Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family. (461 aa)    
Predicted Functional Partners:
CUS_4917
Conserved domain protein.
 
     0.882
CUS_4913
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
       0.773
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
       0.773
CUS_4915
Putative ribonuclease M5; Identified by match to protein family HMM PF01751.
       0.773
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.693
CUS_7329
Hypothetical protein.
 
     0.667
CUS_5074
Hypothetical protein.
  
   0.666
CUS_5735
Hypothetical protein.
  
   0.654
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.653
CUS_4912
Histidine triad domain protein; Identified by match to protein family HMM PF01230.
       0.566
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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