Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4916Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family. (461 aa)    
Predicted Functional Partners:
CUS_4917
Conserved domain protein.
 
  
  0.901
CUS_4913
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
       0.773
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
       0.773
CUS_4915
Putative ribonuclease M5; Identified by match to protein family HMM PF01751.
       0.773
CUS_7329
Hypothetical protein.
 
  
  0.721
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
  
 
  0.679
CUS_6422
Conserved domain protein.
 
  
  0.568
CUS_4912
Histidine triad domain protein; Identified by match to protein family HMM PF01230.
       0.566
CUS_5732
Putative alginate O-acetyltransferase AlgI; Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
  
  
 
0.561
CUS_5644
Putative linear gramicidin synthetase LgrC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733.
  
 
 0.541
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.