STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4921DNA replication protein DnaC family protein. (333 aa)    
Predicted Functional Partners:
CUS_4920
DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.
 
    0.926
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.849
CUS_4922
Putative serine esterase; Identified by match to protein family HMM PF05057.
       0.746
CUS_4923
Hypothetical protein.
       0.746
CUS_6973
Hypothetical protein.
  
 
 
 0.739
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
     0.636
CUS_6744
8-oxoguanine DNA-glycosylase (ogg).
  
     0.597
scfB
six-Cys-in-45 modification radical SAM protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03974.
 
     0.542
CUS_4919
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.
       0.455
CUS_6001
Hydrid cluster protein-associated redox disulfide domain protein; Identified by match to protein family HMM TIGR03980.
  
     0.425
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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