Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_4925Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (224 aa)    
Predicted Functional Partners:
CUS_5657
Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.
  
 0.849
CUS_4924
Identified by match to protein family HMM PF00149.
       0.773
CUS_7855
Identified by match to protein family HMM PF00581.
  
 0.620
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
   
 0.617
CUS_4926
Identified by match to protein family HMM PF08903.
       0.572
CUS_4927
Hypothetical protein; Identified by glimmer; putative.
       0.572
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
    
 
 0.535
CUS_4928
Hypothetical protein.
       0.531
CUS_6294
Peptidase M15; Identified by match to protein family HMM PF01453; match to protein family HMM PF08291.
   
    0.528
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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