STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4928Hypothetical protein. (383 aa)    
Predicted Functional Partners:
CUS_4926
Identified by match to protein family HMM PF08903.
       0.714
CUS_4927
Hypothetical protein; Identified by glimmer; putative.
       0.714
CUS_6884
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.638
CUS_6885
ABC-2 type transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061.
  
     0.566
CUS_4924
Identified by match to protein family HMM PF00149.
       0.531
CUS_4925
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
       0.531
dpaB
Dipicolinic acid synthetase, B subunit; Identified by match to protein family HMM PF02441.
       0.443
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.