Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4935BNR/Asp-box repeat protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF02012. (976 aa)    
Predicted Functional Partners:
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
    0.755
CUS_5441
Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.
  
   
 0.753
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
     0.741
CUS_5681
Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.737
CUS_5609
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
    0.732
CUS_6391
Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.
 
     0.732
CUS_5680
Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.
  
   
 0.711
xyn11E
Carbohydrate binding domain protein; Identified by match to protein family HMM PF00457; match to protein family HMM PF01522; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.710
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
  
     0.701
CUS_5279
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.701
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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