Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4959Alpha-galactosidase; Identified by match to protein family HMM PF02065. (736 aa)    
Predicted Functional Partners:
CUS_7589
Putative beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
 
 0.913
CUS_7069
Alpha-galactosidase; Identified by match to protein family HMM PF02065.
  
  
 
0.891
CUS_6562
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
  
 
 0.858
CUS_7064
Hypothetical protein.
  
  
  0.852
CUS_4551
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.808
CUS_7372
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.787
CUS_4957
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
    0.777
CUS_6887
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
  
 
 0.700
galT
UTP--hexose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR01239.
 
  
 0.698
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
 
  
  0.620
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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