STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4959Alpha-galactosidase; Identified by match to protein family HMM PF02065. (736 aa)    
Predicted Functional Partners:
CUS_7069
Alpha-galactosidase; Identified by match to protein family HMM PF02065.
  
  
 
0.931
CUS_7589
Putative beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
  
 0.918
CUS_6562
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
    
  0.908
CUS_7064
Hypothetical protein.
  
  
  0.895
CUS_4551
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.815
CUS_7372
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.810
CUS_6887
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
  
 
 0.790
CUS_4957
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
    0.777
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
 
  
  0.731
CUS_6801
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.688
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.