Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_4982Identified by match to protein family HMM PF00614. (137 aa)    
Predicted Functional Partners:
CUS_4295
Conserved domain protein.
 
     0.976
CUS_4981
Identified by match to protein family HMM PF00149.
       0.775
ppk1
Polyphosphate kinase 1; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
  
  
 0.671
psd
Phosphatidylserine decarboxylase; Identified by match to protein family HMM PF02666; match to protein family HMM TIGR00163; Belongs to the phosphatidylserine decarboxylase family.
   
 0.541
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.496
CUS_4846
Identified by match to protein family HMM PF01569.
    
 0.494
cdsA
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.
     
 0.481
CUS_6024
Acyltransferase; Identified by match to protein family HMM PF01553.
 
 
 0.474
CUS_6460
Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147.
   
 0.468
CUS_7237
CDP-alcohol phosphatidyltransferase; Identified by match to protein family HMM PF01066.
    
 0.466
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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