Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5001Hypothetical protein. (759 aa)    
Predicted Functional Partners:
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
 0.946
CUS_5002
Glycosyl hydrolase family 26; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
 
     0.809
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
 
  0.793
CUS_7372
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.754
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.745
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
  
     0.721
CUS_6624
Identified by match to protein family HMM PF07944.
  
     0.711
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
   
 0.706
CUS_4675
SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.
    
 0.703
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
  
  0.695
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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