STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5017Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. (84 aa)    
Predicted Functional Partners:
CUS_4851
Putative membrane protein.
  
     0.601
CUS_8101
Hypothetical protein.
  
     0.552
CUS_7139
Dockerin type I repeat protein.
  
     0.512
CUS_5822
Identified by match to protein family HMM PF04203.
  
     0.481
CUS_7625
Heavy metal-binding family protein.
  
     0.458
CUS_7991
Conserved domain protein.
  
   0.405
CUS_8151
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.403
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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