STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcrABacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005. (311 aa)    
Predicted Functional Partners:
CUS_5034
Conserved domain protein.
  
  0.903
CUS_5036
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.856
CUS_5032
Hypothetical protein; Identified by glimmer; putative.
       0.768
CUS_5035
Putative membrane protein.
       0.757
CUS_4313
Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.742
CUS_5031
Putative response regulator MprA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.714
CUS_5422
Conserved domain protein; Overlaps another CDS with the same product name.
  
  0.670
CUS_7293
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
   
  0.620
CUS_8074
Putative membrane protein.
   
  0.620
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.594
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.