Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5047Pectinesterase; Identified by match to protein family HMM PF01095. (596 aa)    
Predicted Functional Partners:
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.870
CUS_6391
Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.
 
  
 0.781
CUS_7194
Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470.
 
  
  0.775
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.774
CUS_6296
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF07470.
 
  
  0.769
xyn10B
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00041; match to protein family HMM PF00331; match to protein family HMM PF02018.
  
     0.759
CUS_5444
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF01839.
  
  
 0.739
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
   
 0.729
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
     0.704
CUS_6624
Identified by match to protein family HMM PF07944.
  
     0.678
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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