STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoBFerrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (783 aa)    
Predicted Functional Partners:
CUS_5070
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5599
Putative ferrous iron transport protein B; Identified by match to protein family HMM PF01926; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231.
 
  
0.751
CUS_6737
FeoA domain protein; Identified by match to protein family HMM PF04023.
 
  
 0.734
CUS_5600
FeoA domain protein; Identified by match to protein family HMM PF04023.
  
  
 0.657
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
 
   
 0.647
CUS_5991
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
 
 0.581
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
      
 0.564
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
  
 0.557
CUS_5858
Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.
     
 0.533
CUS_5997
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; match to protein family HMM PF00909; match to protein family HMM TIGR00836; Belongs to the P(II) protein family.
     
 0.494
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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