STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5095Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420. (366 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02736; match to protein family HMM TIGR00497.
 
 0.981
CUS_5097
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.947
CUS_4333
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 0.910
CUS_5093
Hypothetical protein.
 
     0.856
CUS_4423
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.833
CUS_5096
Fic family protein; Identified by match to protein family HMM PF02661.
 
     0.830
CUS_4274
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
 
 
 0.779
CUS_5100
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
     0.678
CUS_5099
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF00589; match to protein family HMM PF01420; Belongs to the 'phage' integrase family.
    
0.666
CUS_4267
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.660
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.