Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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[Homology]
Score
CUS_5099Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF00589; match to protein family HMM PF01420; Belongs to the 'phage' integrase family. (528 aa)    
Predicted Functional Partners:
CUS_5097
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
     0.912
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02736; match to protein family HMM TIGR00497.
 
     0.853
CUS_5098
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5100
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
     0.745
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
   
 
  0.693
CUS_5095
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
    
0.666
CUS_5018
Hypothetical protein.
  
     0.661
CUS_5096
Fic family protein; Identified by match to protein family HMM PF02661.
 
     0.646
CUS_4333
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
  
     0.575
CUS_5093
Hypothetical protein.
 
    
0.508
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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