Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_5102DNA binding domain protein, excisionase family. (76 aa)    
Predicted Functional Partners:
CUS_5103
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02920; Belongs to the 'phage' integrase family.
 
   
 0.888
CUS_5101
Hypothetical protein.
 
     0.652
CUS_7462
Hypothetical protein.
  
     0.497
CUS_4309
Hypothetical protein.
  
     0.464
CUS_5931
Hypothetical protein.
  
     0.452
CUS_7739
Conserved domain protein.
  
     0.406
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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