Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5113Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386. (435 aa)    
Predicted Functional Partners:
CUS_5114
Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
 
 
 0.965
CUS_4508
Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
 
 
 0.866
CUS_6659
Putative Ktr system potassium uptake protein A; Identified by match to protein family HMM PF02254.
 
 
 0.866
CUS_5115
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.464
kdpE-2
KDP operon transcriptional regulatory protein KdpE; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.443
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.424
CUS_6212
Ion channel; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.415
CUS_7635
Transporter, cation channel family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.415
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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