Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5142Conserved domain protein. (439 aa)    
Predicted Functional Partners:
CUS_5143
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.
 
 
 0.957
CUS_7748
Hypothetical protein.
   
 
 0.724
CUS_5106
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 
 0.714
CUS_7923
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 
 0.714
CUS_6637
Identified by match to protein family HMM PF04647.
 
  
  0.680
CUS_6634
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.598
CUS_6290
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.572
CUS_4602
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.516
CUS_7514
Conserved domain protein; Overlaps another CDS with the same product name.
  
  
0.510
CUS_6262
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.427
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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